miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|75971076|gb|AM061714.1|AM061714 AACAGAGAAGAAAAATATAGGGTAAAAACTTCATGTGGTTAGCCGATTTTGTTACGTTGTGCGAATGTGTAAAGATCCAT
CAGTGATTTACATTCTAATTTTTCCATCAGGCGACTTTTATAAGTGCTGACAGTTTTGTTGCTGATGAACATTTTTTCAG
CAATGTCATTATTATCCTTGCCATCAAGAATATACCGCATGACACTAATTTCTTGTTTCGATAAGGAGTCGAGTTTTTGC
TGGTCGGACGTTAAACTTCCAACAAACCGGTTGAGAGAGAAGGGGAAATAGCAGTAGCCATTTTTTGCAGCTTCAATAGC
CGCAATGATATTGTTCATGCCTTCTTTTTTACTCACGAAACCATTAGCGCCAGCATCAGCACAATGTTTCCCGTAAAAAT
GGTCATTTTTAGCGGAGACGATAATAATAATTCCGCTATATTGGCGCTTCCTCAGCGTTTCTAACACCTGGATACCGTTA
ACTCCGGGGATATCGACATCAATGATGACGATATCAGGCTTAAGTGTTTCCACCCGCTGAACGGCACTTCCGCCTTCAGT
CAACTCTGCTAAGATTTCAATATCGTTTTTGATCAATAAATTACGAATTGCTGCGATAGCAAGAGGATGGTCATCAATAA
TTATTGCGTTCATAGATTATTCCCTTTGCAATGAAGCATCTCCCTTCTCCCTGTAGTAATACAGACATAAGGCGTCATCT
CATTTTCTCAA




Most similar to sp|P0ACZ7|EVGA_SHIFL

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P0ACZ7|EVGA_SHIFL Positive transcription regulator evgA
           OS=Shigella flexneri GN=evgA PE=3 SV=1
          Length = 204

 Score =  336 bits (862), Expect = 8e-92
 Identities = 178/204 (87%), Positives = 178/204 (87%)
 Frame = -1

Query: 653 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKXXXXXXXXXXXXXXX 474
           MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLK               
Sbjct: 1   MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60

Query: 473 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMXXXXXXXXXXXNGY 294
           IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGM           NGY
Sbjct: 61  IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120

Query: 293 CYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKS 114
           CYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKS
Sbjct: 121 CYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKS 180

Query: 113 RLMEKLECKSLMDLYTFAQRNKIG 42
           RLMEKLECKSLMDLYTFAQRNKIG
Sbjct: 181 RLMEKLECKSLMDLYTFAQRNKIG 204